Source code for SPARQLWrapper.Wrapper

# -*- coding: utf-8 -*-

"""
..
  .. seealso:: `SPARQL Specification <http://www.w3.org/TR/rdf-sparql-query/>`_

  Developers involved:

  * Ivan Herman <http://www.ivan-herman.net>
  * Sergio Fernández <http://www.wikier.org>
  * Carlos Tejo Alonso <http://www.dayures.net>
  * Alexey Zakhlestin <https://indeyets.ru/>

  Organizations involved:

  * `World Wide Web Consortium <http://www.w3.org>`_
  * `Salzburg Research <http://www.salzburgresearch.at>`_
  * `Foundation CTIC <http://www.fundacionctic.org/>`_

  :license: `W3C® Software notice and license <http://www.w3.org/Consortium/Legal/copyright-software>`_

  :requires: `RDFLib <https://rdflib.readthedocs.io>`_ package.
"""

import urllib
import urllib2
from urllib2 import urlopen as urlopener  # don't change the name: tests override it
import base64
import re
import sys
import warnings

import json
from KeyCaseInsensitiveDict import KeyCaseInsensitiveDict
from SPARQLExceptions import QueryBadFormed, EndPointNotFound, EndPointInternalError, Unauthorized, URITooLong
from SPARQLWrapper import __agent__

#  From <https://www.w3.org/TR/sparql11-protocol/#query-success>
#  The response body of a successful query operation with a 2XX response is either:
#  * SELECT and ASK: a SPARQL Results Document in XML, JSON, or CSV/TSV format.
#  * DESCRIBE and CONSTRUCT: an RDF graph serialized, for example, in the RDF/XML syntax, or an equivalent RDF graph serialization.
#
#  Possible parameter keys and values...
#  Examples:
#  - ClioPatria: the SWI-Prolog Semantic Web Server <http://cliopatria.swi-prolog.org/home>
#    * Parameter key: "format" <http://cliopatria.swi-prolog.org/help/http>
#    * Parameter value must have one of these values: "rdf+xml", "json", "csv", "application/sparql-results+xml" or "application/sparql-results+json".
#
################################################################################
#
#  - OpenLink Virtuoso  <http://virtuoso.openlinksw.com>
#    * Parameter key: "format" or "output"
#    * Parameter value, like directly:
#      "text/html" (HTML), "text/x-html+tr" (HTML (Faceted Browsing Links)), "application/vnd.ms-excel"
#      "application/sparql-results+xml" (XML), "application/sparql-results+json", (JSON)
#      "application/javascript" (Javascript), "text/turtle" (Turtle), "application/rdf+xml" (RDF/XML)
#      "text/plain" (N-Triples), "text/csv" (CSV), "text/tab-separated-values" (TSV)
#    * Parameter value, like indirectly:
#      "HTML" (alias text/html), "JSON" (alias application/sparql-results+json), "XML" (alias application/sparql-results+xml), "TURTLE" (alias text/rdf+n3), JavaScript (alias application/javascript)
#       See  <http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSSparqlProtocol#Additional HTTP Response Formats -- SELECT>
#
#      For a SELECT query type, the default return mimetype (if Accept: */* is sent) is application/sparql-results+xml
#      For a ASK query type, the default return mimetype (if Accept: */* is sent) is text/html
#      For a CONSTRUCT query type, the default return mimetype (if Accept: */* is sent) is text/turtle
#      For a DESCRIBE query type, the default return mimetype (if Accept: */* is sent) is text/turtle
#
################################################################################
#
#  - Fuseki (formerly there was Joseki) <https://jena.apache.org/documentation/serving_data/>
#    * Uses: Parameters AND Content Negotiation
#    * Parameter key: "format" or "output"
#    * JSON-LD (application/ld+json): supported (in CONSTRUCT and DESCRIBE)
#
#    * Parameter key: "format" or "output"
#      See Fuseki 1: https://github.com/apache/jena/blob/master/jena-fuseki1/src/main/java/org/apache/jena/fuseki/HttpNames.java
#      See Fuseki 2: https://github.com/apache/jena/blob/master/jena-arq/src/main/java/org/apache/jena/riot/web/HttpNames.java
#    * Fuseki 1 - Short names for "output=" : "json", "xml", "sparql", "text", "csv", "tsv", "thrift"
#      See <https://github.com/apache/jena/blob/master/jena-fuseki1/src/main/java/org/apache/jena/fuseki/servlets/ResponseResultSet.java>
#    * Fuseki 2 - Short names for "output=" : "json", "xml", "sparql", "text", "csv", "tsv", "thrift"
#      See <https://github.com/apache/jena/blob/master/jena-fuseki2/jena-fuseki-core/src/main/java/org/apache/jena/fuseki/servlets/ResponseResultSet.java>
#      If a non-expected short name is used, the server returns an "Error 400: Can't determine output serialization"
#      Valid alias for SELECT and ASK: "json", "xml", csv", "tsv"
#      Valid alias for DESCRIBE and CONSTRUCT: "json" (alias for json-ld ONLY in Fuseki2), "xml"
#      Valid mimetype for DESCRIBE and CONSTRUCT: "application/ld+json"
#      Default return mimetypes: For a SELECT and ASK query types, the default return mimetype (if Accept: */* is sent) is application/sparql-results+json
#      Default return mimetypes: For a DESCRIBE and CONTRUCT query types, the default return mimetype (if Accept: */* is sent) is text/turtle
#      In case of a bad formed query, Fuseki1 returns 200 instead of 400.
#
################################################################################
#
#  - Eclipse RDF4J <http://rdf4j.org/>
#    * Formerly known as OpenRDF Sesame
#    * Uses: ONLY Content Negotiation
#    * See <https://rdf4j.eclipse.org/documentation/rest-api/#the-query-operation>
#    * See <https://rdf4j.eclipse.org/documentation/rest-api/#content-types>
#    * Parameter: If an unexpected parameter is used, the server ignores it.
#
#    ** SELECT
#    *** application/sparql-results+xml (DEFAULT if Accept: */* is sent))
#    *** application/sparql-results+json (also application/json)
#    *** text/csv
#    *** text/tab-separated-values
#    *** Other values: application/x-binary-rdf-results-table
#
#    ** ASK
#    *** application/sparql-results+xml (DEFAULT if Accept: */* is sent))
#    *** application/sparql-results+json
#    *** Other values: text/boolean
#    *** Not supported: text/csv
#    *** Not supported: text/tab-separated-values
#
#    ** CONSTRUCT
#    *** application/rdf+xml
#    *** application/n-triples (DEFAULT if Accept: */* is sent)
#    *** text/turtle
#    *** text/n3
#    *** application/ld+json
#    *** Other acceptable values: application/n-quads, application/rdf+json, application/trig, application/trix, application/x-binary-rdf
#    *** text/plain (returns application/n-triples)
#    *** text/rdf+n3 (returns text/n3)
#    *** text/x-nquads (returns application/n-quads)
#
#    ** DESCRIBE
#    *** application/rdf+xml
#    *** application/n-triples (DEFAULT if Accept: */* is sent)
#    *** text/turtle
#    *** text/n3
#    *** application/ld+json
#    *** Other acceptable values: application/n-quads, application/rdf+json, application/trig, application/trix, application/x-binary-rdf
#    *** text/plain (returns application/n-triples)
#    *** text/rdf+n3 (returns text/n3)
#    *** text/x-nquads (returns application/n-quads)
#
#      Default return mimetypes: For a SELECT and ASK query types, the default return mimetype (if Accept: */* is sent) is application/sparql-results+xml
#      Default return mimetypes: For a DESCRIBE and CONTRUCT query types, the default return mimetype (if Accept: */* is sent) is application/n-triples
#
#
################################################################################
#
#  - RASQAL <http://librdf.org/rasqal/>
#    * Parameter key: "results"
#    * Uses roqet as RDF query utility
#      For variable bindings, the values of FORMAT vary upon what Rasqal supports but include simple
#      for a simple text format (default), xml for the SPARQL Query Results XML format, csv for SPARQL CSV,
#      tsv for SPARQL TSV, rdfxml and turtle for RDF syntax formats, and json for a JSON version of the results.
#
#      For RDF graph results, the values of FORMAT are ntriples (N-Triples, default),
#      rdfxml-abbrev (RDF/XML Abbreviated), rdfxml (RDF/XML), turtle (Turtle),
#      json (RDF/JSON resource centric), json-triples (RDF/JSON triples) or
#      rss-1.0 (RSS 1.0, also an RDF/XML syntax).
#
#      See <http://librdf.org/rasqal/roqet.html>
#
################################################################################
#
#  - Marklogic <http://marklogic.com>
#    * Uses content negotiation (no URL parameters).
#    * You can use following methods to query triples <https://docs.marklogic.com/guide/semantics/semantic-searches#chapter>:
#      - SPARQL mode in Query Console. For details, see Querying Triples with SPARQL
#      - XQuery using the semantics functions, and Search API, or a combination of XQuery and SPARQL. For details, see Querying Triples with XQuery or JavaScript.
#      - HTTP via a SPARQL endpoint. For details, see Using Semantics with the REST Client API.
#    * Formats are specified as part of the HTTP Accept headers of the REST request. <https://docs.marklogic.com/guide/semantics/REST#id_92428>
#      - When you query the SPARQL endpoint with REST Client APIs, you can specify the result output format.  <https://docs.marklogic.com/guide/semantics/REST#id_54258>
#        The response type format depends on the type of query and the MIME type in the HTTP Accept header.
#      - This table describes the MIME types and Accept Header/Output formats (MIME type) for different types of SPARQL queries. See <https://docs.marklogic.com/guide/semantics/REST#id_54258> and <https://docs.marklogic.com/guide/semantics/loading#id_70682>
#        SELECT "application/sparql-results+xml", "application/sparql-results+json", "text/html", "text/csv"
#        CONSTRUCT or DESCRIBE "application/n-triples", "application/rdf+json", "application/rdf+xml", "text/turtle", "text/n3", "application/n-quads", "application/trig"
#        ASK queries return a boolean (true or false).
#
################################################################################
#
#  - AllegroGraph <https://franz.com/agraph/allegrograph/>
#    * Uses only content negotiation (no URL parameters).
#    * The server always looks at the Accept header of a request, and tries to
#      generate a response in the format that the client asks for. If this fails,
#      a 406 response is returned. When no Accept, or an Accept of */* is specified,
#      the server prefers text/plain, in order to make it easy to explore the interface from a web browser.
#    * Accept header expected (values returned by server when a wrong header is sent):
#    ** SELECT
#    *** application/sparql-results+xml (DEFAULT if Accept: */* is sent)
#    *** application/sparql-results+json (and application/json)
#    *** text/csv
#    *** text/tab-separated-values
#    *** OTHERS: application/sparql-results+ttl, text/integer, application/x-lisp-structured-expression, text/table, application/processed-csv, text/simple-csv, application/x-direct-upis
#
#    ** ASK
#    *** application/sparql-results+xml (DEFAULT if Accept: */* is sent)
#    *** application/sparql-results+json (and application/json)
#    *** Not supported: text/csv
#    *** Not supported: text/tab-separated-values
#
#    ** CONSTRUCT
#    *** application/rdf+xml (DEFAULT if Accept: */* is sent)
#    *** text/rdf+n3
#    *** OTHERS: text/integer, application/json, text/plain, text/x-nquads, application/trix, text/table, application/x-direct-upis
#
#    ** DESCRIBE
#    *** application/rdf+xml (DEFAULT if Accept: */* is sent)
#    *** text/rdf+n3
#
#      See <https://franz.com/agraph/support/documentation/current/http-protocol.html>
#
################################################################################
#
#  - 4store. Code repository <https://github.com/4store/4store> documentation <https://4store.danielknoell.de/trac/wiki/SparqlServer/>
#    * Uses: Parameters AND Content Negotiation
#    * Parameter key: "output"
#    * Parameter value: alias. If an unexpected alias is used, the server is not working properly
#    * JSON-LD: NOT supported
#
#    ** SELECT
#    *** application/sparql-results+xml (alias xml) (DEFAULT if Accept: */* is sent))
#    *** application/sparql-results+json or application/json (alias json)
#    *** text/csv (alias csv)
#    *** text/tab-separated-values (alias tsv). Returns "text/plain" in GET.
#    *** Other values: text/plain, application/n-triples
#
#    ** ASK
#    *** application/sparql-results+xml (alias xml) (DEFAULT if Accept: */* is sent))
#    *** application/sparql-results+json or application/json (alias json)
#    *** text/csv (alias csv)
#    *** text/tab-separated-values (alias tsv). Returns "text/plain" in GET.
#    *** Other values: text/plain, application/n-triples
#
#    ** CONSTRUCT
#    *** application/rdf+xml (alias xml) (DEFAULT if Accept: */* is sent)
#    *** text/turtle (alias "text")
#
#    ** DESCRIBE
#    *** application/rdf+xml (alias xml) (DEFAULT if Accept: */* is sent)
#    *** text/turtle (alias "text")
#
#      Valid alias for SELECT and ASK: "json", "xml", csv", "tsv" (also "text" and "ascii")
#      Valid alias for DESCRIBE and CONSTRUCT: "xml", "text" (for turtle)
#      Default return mimetypes: For a SELECT and ASK query types, the default return mimetype (if Accept: */* is sent) is application/sparql-results+xml
#      Default return mimetypes: For a DESCRIBE and CONTRUCT query types, the default return mimetype (if Accept: */* is sent) is application/rdf+xml
#
#
################################################################################
#
#  - Blazegraph <https://www.blazegraph.com/> & NanoSparqlServer <https://wiki.blazegraph.com/wiki/index.php/NanoSparqlServer> <https://wiki.blazegraph.com/wiki/index.php/REST_API#SPARQL_End_Point>
#    * Formerly known as Bigdata
#    * Uses: Parameters AND Content Negotiation
#    * Parameter key: "format" (available since version 1.4.0). Setting this parameter will override any Accept Header that is present. <https://wiki.blazegraph.com/wiki/index.php/REST_API#GET_or_POST>
#    * Parameter value: alias. If an unexpected alias is used, the server is not working properly
#
#    ** SELECT
#    *** application/sparql-results+xml (alias xml) (DEFAULT if Accept: */* is sent))
#    *** application/sparql-results+json or application/json (alias json)
#    *** text/csv
#    *** text/tab-separated-values
#    *** Other values: application/x-binary-rdf-results-table
#
#    ** ASK
#    *** application/sparql-results+xml (alias xml) (DEFAULT if Accept: */* is sent))
#    *** application/sparql-results+json or application/json (alias json)
#
#    ** CONSTRUCT
#    *** application/rdf+xml (alias xml) (DEFAULT if Accept: */* is sent)
#    *** text/turtle (returns text/n3)
#    *** text/n3
#
#    ** DESCRIBE
#    *** application/rdf+xml (alias xml) (DEFAULT if Accept: */* is sent)
#    *** text/turtle (returns text/n3)
#    *** text/n3
#
#      Valid alias for SELECT and ASK: "xml", "json"
#      Valid alias for DESCRIBE and CONSTRUCT: "xml", "json" (but it returns unexpected "application/sparql-results+json")
#      Default return mimetypes: For a SELECT and ASK query types, the default return mimetype (if Accept: */* is sent) is application/sparql-results+xml
#      Default return mimetypes: For a DESCRIBE and CONTRUCT query types, the default return mimetype (if Accept: */* is sent) is application/rdf+xml
#
################################################################################
#
#  - GraphDB <http://graphdb.ontotext.com/> <http://graphdb.ontotext.com/documentation/free/> 
#    * Formerly known as OWLIM (OWLIM-Lite, OWLIM-SE)
#    * Uses: Only Content Negotiation.
#    * If the Accept value is not within the expected ones, the server returns a 406 "No acceptable file format found."
#
#    ** SELECT
#    *** DEFAULT (if Accept: */* is sent): text/csv
#    *** application/sparql-results+xml, application/xml (.srx file)
#    *** application/sparql-results+json, application/json (.srj file)
#    *** text/csv (DEFAULT if Accept: */* is sent)
#    *** text/tab-separated-values
#
#    ** ASK
#    *** DEFAULT (if Accept: */* is sent): application/sparql-results+json
#    *** application/sparql-results+xml, application/xml (.srx file)
#    *** application/sparql-results+json (DEFAULT if Accept: */* is sent), application/json (.srj file)
#    *** NOT supported: text/csv, text/tab-separated-values
#
#    ** CONSTRUCT
#    *** DEFAULT (if Accept: */* is sent): application/n-triples
#    *** application/rdf+xml, application/xml (.rdf file)
#    *** text/turtle (.ttl file)
#    *** application/n-triples (.nt file) (DEFAULT if Accept: */* is sent)
#    *** text/n3, text/rdf+n3 (.n3 file)
#    *** application/ld+json (.jsonld file)
#
#    ** DESCRIBE
#    *** DEFAULT (if Accept: */* is sent): application/n-triples
#    *** application/rdf+xml, application/xml (.rdf file)
#    *** text/turtle (.ttl file)
#    *** application/n-triples (.nt file) (DEFAULT if Accept: */* is sent)
#    *** text/n3, text/rdf+n3 (.n3 file)
#    *** application/ld+json (.jsonld file)
#
################################################################################
#
#  - Stardog <https://www.stardog.com> <https://www.stardog.com/docs/#_http_headers_content_type_accept> (the doc looks outdated)
#    * Uses: ONLY Content Negotiation
#    * Parameter: If an unexpected parameter is used, the server ignores it.
#
#    ** SELECT
#    *** application/sparql-results+xml (DEFAULT if Accept: */* is sent))
#    *** application/sparql-results+json
#    *** text/csv
#    *** text/tab-separated-values
#    *** Other values: application/x-binary-rdf-results-table
#
#    ** ASK
#    *** application/sparql-results+xml (DEFAULT if Accept: */* is sent))
#    *** application/sparql-results+json
#    *** Other values: text/boolean
#    *** Not supported: text/csv
#    *** Not supported: text/tab-separated-values
#
#    ** CONSTRUCT
#    *** application/rdf+xml
#    *** text/turtle (DEFAULT if Accept: */* is sent)
#    *** text/n3
#    *** application/ld+json
#    *** Other acceptable values: application/n-triples, application/x-turtle, application/trig, application/trix, application/n-quads
#
#    ** DESCRIBE
#    *** application/rdf+xml
#    *** text/turtle (DEFAULT if Accept: */* is sent)
#    *** text/n3
#    *** application/ld+json
#    *** Other acceptable values: application/n-triples, application/x-turtle, application/trig, application/trix, application/n-quads
#
#      Default return mimetypes: For a SELECT and ASK query types, the default return mimetype (if Accept: */* is sent) is application/sparql-results+xml
#      Default return mimetypes: For a DESCRIBE and CONTRUCT query types, the default return mimetype (if Accept: */* is sent) is text/turtle
#
################################################################################

# alias

XML    = "xml"
"""to be used to set the return format to ``XML`` (``SPARQL Query Results XML`` format or ``RDF/XML``, depending on the query type). **This is the default**."""
JSON   = "json"
"""to be used to set the return format to ``JSON``."""
JSONLD = "json-ld"
"""to be used to set the return format to ``JSON-LD``."""
TURTLE = "turtle"
"""to be used to set the return format to ``Turtle``."""
N3     = "n3"
"""to be used to set the return format to ``N3`` (for most of the SPARQL services this is equivalent to Turtle)."""
RDF    = "rdf"
"""to be used to set the return ``RDF Graph``."""
RDFXML = "rdf+xml"
"""to be used to set the return format to ``RDF/XML`` explicitly."""
CSV    = "csv"
"""to be used to set the return format to ``CSV``"""
TSV    = "tsv"
"""to be used to set the return format to ``TSV``"""
_allowedFormats = [JSON, XML, TURTLE, N3, RDF, RDFXML, CSV, TSV]

# Possible HTTP methods
GET = "GET"
"""to be used to set HTTP method ``GET``. **This is the default**."""
POST = "POST"
"""to be used to set HTTP method ``POST``."""
_allowedRequests = [POST, GET]

# Possible HTTP Authentication methods
BASIC = "BASIC"
"""to be used to set ``BASIC`` HTTP Authentication method."""
DIGEST = "DIGEST"
"""to be used to set ``DIGEST`` HTTP Authentication method."""
_allowedAuth = [BASIC, DIGEST]

# Possible SPARQL/SPARUL query type (aka SPARQL Query forms)
SELECT     = "SELECT"
"""to be used to set the query type to ``SELECT``. This is, usually, determined automatically."""
CONSTRUCT  = "CONSTRUCT"
"""to be used to set the query type to ``CONSTRUCT``. This is, usually, determined automatically."""
ASK        = "ASK"
"""to be used to set the query type to ``ASK``. This is, usually, determined automatically."""
DESCRIBE   = "DESCRIBE"
"""to be used to set the query type to ``DESCRIBE``. This is, usually, determined automatically."""
INSERT     = "INSERT"
"""to be used to set the query type to ``INSERT``. This is, usually, determined automatically."""
DELETE     = "DELETE"
"""to be used to set the query type to ``DELETE``. This is, usually, determined automatically."""
CREATE     = "CREATE"
"""to be used to set the query type to ``CREATE``. This is, usually, determined automatically."""
CLEAR      = "CLEAR"
"""to be used to set the query type to ``CLEAR``. This is, usually, determined automatically."""
DROP       = "DROP"
"""to be used to set the query type to ``DROP``. This is, usually, determined automatically."""
LOAD       = "LOAD"
"""to be used to set the query type to ``LOAD``. This is, usually, determined automatically."""
COPY       = "COPY"
"""to be used to set the query type to ``COPY``. This is, usually, determined automatically."""
MOVE       = "MOVE"
"""to be used to set the query type to ``MOVE``. This is, usually, determined automatically."""
ADD        = "ADD"
"""to be used to set the query type to ``ADD``. This is, usually, determined automatically."""
_allowedQueryTypes = [SELECT, CONSTRUCT, ASK, DESCRIBE, INSERT, DELETE, CREATE, CLEAR, DROP,
                      LOAD, COPY, MOVE, ADD]

# Possible methods to perform requests
URLENCODED = "urlencoded"
"""to be used to set **URL encode** as the encoding method for the request. This is, usually, determined automatically."""
POSTDIRECTLY = "postdirectly"
"""to be used to set **POST directly** as the encoding method for the request. This is, usually, determined automatically."""
_REQUEST_METHODS = [URLENCODED, POSTDIRECTLY]

# Possible output format (mime types) that can be converted by the local script. Unfortunately,
# it does not work by simply setting the return format, because there is still a certain level of confusion
# among implementations.
# For example, Joseki returns application/javascript and not the sparql-results+json thing that is required...
# Ie, alternatives should be given...
# Andy Seaborne told me (June 2007) that the right return format is now added to his CVS, ie, future releases of
# joseki will be o.k., too. The situation with turtle and n3 is even more confusing because the text/n3 and text/turtle
# mime types have just been proposed and not yet widely used...
_SPARQL_DEFAULT  = ["application/sparql-results+xml", "application/rdf+xml", "*/*"]
_SPARQL_XML      = ["application/sparql-results+xml"]
_SPARQL_JSON     = ["application/sparql-results+json", "application/json", "text/javascript", "application/javascript"] # VIVO server returns "application/javascript"
_RDF_XML         = ["application/rdf+xml"]
_RDF_TURTLE      = ["application/turtle", "text/turtle"]
_RDF_N3          = _RDF_TURTLE + ["text/rdf+n3", "application/n-triples", "application/n3", "text/n3"]
_RDF_JSONLD      = ["application/ld+json", "application/x-json+ld"]
_CSV             = ["text/csv"]
_TSV             = ["text/tab-separated-values"]
_XML             = ["application/xml"]
_ALL             = ["*/*"]
_RDF_POSSIBLE    = _RDF_XML + _RDF_N3 + _XML

_SPARQL_PARAMS = ["query"]

try:
    import rdflib_jsonld
    _allowedFormats.append(JSONLD)
    _RDF_POSSIBLE = _RDF_POSSIBLE + _RDF_JSONLD
except ImportError:
    #warnings.warn("JSON-LD disabled because no suitable support has been found", RuntimeWarning)
    pass

# This is very ugly. The fact is that the key for the choice of the output format is not defined.
# Virtuoso uses 'format', joseki uses 'output', rasqual seems to use "results", etc. Lee Feigenbaum
# told me that virtuoso also understand 'output' these days, so I removed 'format'. I do not have
# info about the others yet, ie, for the time being I keep the general mechanism. Hopefully, in a
# future release, I can get rid of that. However, these processors are (hopefully) oblivious to the
# parameters they do not understand. So: just repeat all possibilities in the final URI. UGLY!!!!!!!
_returnFormatSetting = ["format", "output", "results"]

#######################################################################################################


[docs]class SPARQLWrapper(object): """ Wrapper around an online access to a SPARQL Web entry point. The same class instance can be reused for subsequent queries. The values of the base Graph URI, return formats, etc, are retained from one query to the next (in other words, only the query string changes). The instance can also be reset to its initial values using the :meth:`resetQuery` method. :ivar endpoint: SPARQL endpoint's URI. :vartype endpoint: string :ivar updateEndpoint: SPARQL endpoint's URI for SPARQL Update operations (if it's a different one). The **default** value is ``None``. :vartype updateEndpoint: string :ivar agent: The User-Agent for the HTTP request header. The **default** value is an autogenerated string using the SPARQLWrapper version code. :vartype agent: string :ivar _defaultGraph: URI for the default graph. The value can be set either via an explicit call :func:`addParameter("default-graph-uri", uri)<addParameter>` or as part of the query string. The **default** value is ``None``. :vartype _defaultGraph: string :ivar user: The username of the credentials for querying the current endpoint. The value can be set an explicit call :func:`setCredentials`. The **default** value is ``None``. :vartype user: string :ivar passwd: The password of the credentials for querying the current endpoint. The value can be set an explicit call :func:`setCredentials`. The **default** value is ``None``. :vartype passwd: string :ivar http_auth: HTTP Authentication type. The **default** value is :data:`BASIC`. Possible values are :data:`BASIC` or :data:`DIGEST`. It is used only in case the credentials are set. :vartype http_auth: string :ivar onlyConneg: Option for allowing (or not) **only** HTTP Content Negotiation (so dismiss the use of HTTP parameters). The default value is ``False``. :vartype onlyConneg: boolean :ivar customHttpHeaders: Custom HTTP Headers to be included in the request. It is a dictionary where keys are the header field and values are the header values. **Important**: These headers override previous values (including ``Content-Type``, ``User-Agent``, ``Accept`` and ``Authorization`` if they are present). :vartype customHttpHeaders: dict :ivar timeout: The timeout (in seconds) to use for querying the endpoint. :vartype timeout: int :ivar queryString: The SPARQL query text. :vartype queryString: string :ivar queryType: The type of SPARQL query (aka SPARQL query form), like :data:`CONSTRUCT`, :data:`SELECT`, :data:`ASK`, :data:`DESCRIBE`, :data:`INSERT`, :data:`DELETE`, :data:`CREATE`, :data:`CLEAR`, :data:`DROP`, :data:`LOAD`, :data:`COPY`, :data:`MOVE` or :data:`ADD` (constants in this module). :vartype queryType: string :ivar returnFormat: The return format.\ No local check is done, so the parameter is simply sent to the endpoint. Eg, if the value is set to :data:`JSON` and a construct query is issued, it is up to the endpoint to react or not, this wrapper does not check.\ The possible values are :data:`JSON`, :data:`XML`, :data:`TURTLE`, :data:`N3`, :data:`RDF`, :data:`RDFXML`, :data:`CSV`, :data:`TSV`, :data:`JSONLD` (constants in this module).\ The **default** value is :data:`XML`. :vartype returnFormat: string :ivar requestMethod: The request method for query or update operations. The possibles values are URL-encoded (:data:`URLENCODED`) or POST directly (:data:`POSTDIRECTLY`). :vartype requestMethod: string :ivar method: The invocation method (HTTP verb). The **default** value is :data:`GET`, but it can be set to :data:`POST`. :vartype method: string :ivar parameters: The parameters of the request (key/value pairs in a dictionary). :vartype parameters: dict :ivar _defaultReturnFormat: The default return format. It is used in case the same class instance is reused for subsequent queries. :vartype _defaultReturnFormat: string :cvar prefix_pattern: regular expression used to remove base/prefixes in the process of determining the query type. :vartype prefix_pattern: :class:`re.RegexObject`, a compiled regular expression. See the :mod:`re` module of Python :cvar pattern: regular expression used to determine whether a query (without base/prefixes) is of type :data:`CONSTRUCT`, :data:`SELECT`, :data:`ASK`, :data:`DESCRIBE`, :data:`INSERT`, :data:`DELETE`, :data:`CREATE`, :data:`CLEAR`, :data:`DROP`, :data:`LOAD`, :data:`COPY`, :data:`MOVE` or :data:`ADD`. :vartype pattern: :class:`re.RegexObject`, a compiled regular expression. See the :mod:`re` module of Python :cvar comments_pattern: regular expression used to remove comments from a query. :vartype comments_pattern: :class:`re.RegexObject`, a compiled regular expression. See the :mod:`re` module of Python """ prefix_pattern = re.compile(r"((?P<base>(\s*BASE\s*<.*?>)\s*)|(?P<prefixes>(\s*PREFIX\s+.+:\s*<.*?>)\s*))*") # Maybe the future name could be queryType_pattern pattern = re.compile(r"(?P<queryType>(CONSTRUCT|SELECT|ASK|DESCRIBE|INSERT|DELETE|CREATE|CLEAR|DROP|LOAD|COPY|MOVE|ADD))", re.VERBOSE | re.IGNORECASE) comments_pattern = re.compile(r"(^|\n)\s*#.*?\n")
[docs] def __init__(self, endpoint, updateEndpoint=None, returnFormat=XML, defaultGraph=None, agent=__agent__): """ Class encapsulating a full SPARQL call. :param endpoint: SPARQL endpoint's URI. :type endpoint: string :param updateEndpoint: SPARQL endpoint's URI for update operations (if it's a different one). The **default** value is ``None``. :type updateEndpoint: string :param returnFormat: The return format.\ No local check is done, so the parameter is simply sent to the endpoint. Eg, if the value is set to :data:`JSON` and a construct query is issued, it is up to the endpoint to react or not, this wrapper does not check.\ The possible values are :data:`JSON`, :data:`XML`, :data:`TURTLE`, :data:`N3`, :data:`RDF`, :data:`RDFXML`, :data:`CSV`, :data:`TSV`, :data:`JSONLD` (constants in this module).\ The **default** value is :data:`XML`. :param defaultGraph: URI for the default graph. The value can be set either via an explicit call :func:`addParameter("default-graph-uri", uri)<addParameter>` or as part of the query string. The **default** value is ``None``. :type defaultGraph: string :param agent: The User-Agent for the HTTP request header. The **default** value is an autogenerated string using the SPARQLWrapper version number. :type agent: string """ self.endpoint = endpoint self.updateEndpoint = updateEndpoint if updateEndpoint else endpoint self.agent = agent self.user = None self.passwd = None self.http_auth = BASIC self._defaultGraph = defaultGraph self.onlyConneg = False # Only Content Negotiation self.customHttpHeaders = {} if returnFormat in _allowedFormats: self._defaultReturnFormat = returnFormat else: self._defaultReturnFormat = XML self.resetQuery()
[docs] def resetQuery(self): """Reset the query, ie, return format, method, query, default or named graph settings, etc, are reset to their default values. This includes the default values for parameters, method, timeout or requestMethod. """ self.parameters = {} if self._defaultGraph: self.addParameter("default-graph-uri", self._defaultGraph) self.returnFormat = self._defaultReturnFormat self.method = GET self.setQuery("""SELECT * WHERE{ ?s ?p ?o }""") self.timeout = None self.requestMethod = URLENCODED
[docs] def setReturnFormat(self, format): """Set the return format. If the one set is not an allowed value, the setting is ignored. :param format: Possible values are :data:`JSON`, :data:`XML`, :data:`TURTLE`, :data:`N3`, :data:`RDF`, :data:`RDFXML`, :data:`CSV`, :data:`TSV`, :data:`JSONLD` (constants in this module). All other cases are ignored. :type format: string :raises ValueError: If :data:`JSONLD` is tried to set and the current instance does not support ``JSON-LD``. """ if format in _allowedFormats: self.returnFormat = format elif format == JSONLD: raise ValueError("Current instance does not support JSON-LD; you might want to install the rdflib-jsonld package.") else: warnings.warn("Ignore format '%s'; current instance supports: %s." %(format, ", ".join(_allowedFormats)), SyntaxWarning)
[docs] def supportsReturnFormat(self, format): """Check if a return format is supported. :param format: Possible values are :data:`JSON`, :data:`XML`, :data:`TURTLE`, :data:`N3`, :data:`RDF`, :data:`RDFXML`, :data:`CSV`, :data:`TSV`, :data:`JSONLD` (constants in this module). All other cases are ignored. :type format: string :return: Returns ``True`` if the return format is supported, otherwise ``False``. :rtype: bool """ return (format in _allowedFormats)
[docs] def setTimeout(self, timeout): """Set the timeout (in seconds) to use for querying the endpoint. :param timeout: Timeout in seconds. :type timeout: int """ self.timeout = int(timeout)
[docs] def setOnlyConneg(self, onlyConneg): """Set this option for allowing (or not) only HTTP Content Negotiation (so dismiss the use of HTTP parameters). .. versionadded:: 1.8.1 :param onlyConneg: ``True`` if **only** HTTP Content Negotiation is allowed; ``False`` if HTTP parameters are used. :type onlyConneg: bool """ self.onlyConneg = onlyConneg
[docs] def setRequestMethod(self, method): """Set the internal method to use to perform the request for query or update operations, either URL-encoded (:data:`URLENCODED`) or POST directly (:data:`POSTDIRECTLY`). Further details at `query operation in SPARQL <http://www.w3.org/TR/sparql11-protocol/#query-operation>`_ and `update operation in SPARQL Update <http://www.w3.org/TR/sparql11-protocol/#update-operation>`_. :param method: Possible values are :data:`URLENCODED` (URL-encoded) or :data:`POSTDIRECTLY` (POST directly). All other cases are ignored. :type method: string """ if method in _REQUEST_METHODS: self.requestMethod = method else: warnings.warn("invalid update method '%s'" % method, RuntimeWarning)
[docs] def addDefaultGraph(self, uri): """ Add a default graph URI. .. deprecated:: 1.6.0 Use :func:`addParameter("default-graph-uri", uri)<addParameter>` instead of this method. :param uri: URI of the default graph. :type uri: string """ self.addParameter("default-graph-uri", uri)
[docs] def addNamedGraph(self, uri): """ Add a named graph URI. .. deprecated:: 1.6.0 Use :func:`addParameter("named-graph-uri", uri)<addParameter>` instead of this method. :param uri: URI of the named graph. :type uri: string """ self.addParameter("named-graph-uri", uri)
[docs] def addExtraURITag(self, key, value): """ Some SPARQL endpoints require extra key value pairs. E.g., in virtuoso, one would add ``should-sponge=soft`` to the query forcing virtuoso to retrieve graphs that are not stored in its local database. Alias of :func:`addParameter` method. .. deprecated:: 1.6.0 Use :func:`addParameter(key, value)<addParameter>` instead of this method :param key: key of the query part. :type key: string :param value: value of the query part. :type value: string """ self.addParameter(key, value)
[docs] def addCustomParameter(self, name, value): """ Method is kept for backwards compatibility. Historically, it "replaces" parameters instead of adding. .. deprecated:: 1.6.0 Use :func:`addParameter(key, value)<addParameter>` instead of this method :param name: name. :type name: string :param value: value. :type value: string :return: Returns ``True`` if the adding has been accomplished, otherwise ``False``. :rtype: bool """ self.clearParameter(name) return self.addParameter(name, value)
[docs] def addParameter(self, name, value): """ Some SPARQL endpoints allow extra key value pairs. E.g., in virtuoso, one would add ``should-sponge=soft`` to the query forcing virtuoso to retrieve graphs that are not stored in its local database. If the parameter :attr:`query` is tried to be set, this intent is dismissed. Returns a boolean indicating if the set has been accomplished. :param name: name. :type name: string :param value: value. :type value: string :return: Returns ``True`` if the adding has been accomplished, otherwise ``False``. :rtype: bool """ if name in _SPARQL_PARAMS: return False else: if name not in self.parameters: self.parameters[name] = [] self.parameters[name].append(value) return True
[docs] def addCustomHttpHeader(self, httpHeaderName, httpHeaderValue): """ Add a custom HTTP header (this method can override all HTTP headers). **Important**: Take into account that each previous value for the header field names ``Content-Type``, ``User-Agent``, ``Accept`` and ``Authorization`` would be overriden if the header field name is present as value of the parameter :attr:`httpHeaderName`. .. versionadded:: 1.8.2 :param httpHeaderName: The header field name. :type httpHeaderName: string :param httpHeaderValue: The header field value. :type httpHeaderValue: string """ self.customHttpHeaders[httpHeaderName] = httpHeaderValue
[docs] def clearCustomHttpHeader(self, httpHeaderName): """ Clear the values of a custom HTTP Header previously set. Returns a boolean indicating if the clearing has been accomplished. .. versionadded:: 1.8.2 :param httpHeaderName: HTTP header name. :type httpHeaderName: string :return: Returns ``True`` if the clearing has been accomplished, otherwise ``False``. :rtype: bool """ try: del self.customHttpHeaders[httpHeaderName] return True except KeyError: return False
[docs] def clearParameter(self, name): """ Clear the values of a concrete parameter. Returns a boolean indicating if the clearing has been accomplished. :param name: name :type name: string :return: Returns ``True`` if the clearing has been accomplished, otherwise ``False``. :rtype: bool """ if name in _SPARQL_PARAMS: return False else: try: del self.parameters[name] return True except KeyError: return False
[docs] def setCredentials(self, user, passwd, realm="SPARQL"): """ Set the credentials for querying the current endpoint. :param user: username. :type user: string :param passwd: password. :type passwd: string :param realm: realm. Only used for :data:`DIGEST` authentication. The **default** value is ``SPARQL`` :type realm: string .. versionchanged:: 1.8.3 Added :attr:`realm` parameter. """ self.user = user self.passwd = passwd self.realm = realm
[docs] def setHTTPAuth(self, auth): """ Set the HTTP Authentication type. Possible values are :class:`BASIC` or :class:`DIGEST`. :param auth: auth type. :type auth: string :raises TypeError: If the :attr:`auth` parameter is not an string. :raises ValueError: If the :attr:`auth` parameter has not one of the valid values: :class:`BASIC` or :class:`DIGEST`. """ if not isinstance(auth, str): raise TypeError('setHTTPAuth takes a string') elif auth.upper() in _allowedAuth: self.http_auth = auth.upper() else: valid_types = ", ".join(_allowedAuth) raise ValueError("Value should be one of {0}".format(valid_types))
[docs] def setQuery(self, query): """ Set the SPARQL query text. .. note:: No check is done on the validity of the query (syntax or otherwise) by this module, except for testing the query type (SELECT, ASK, etc). Syntax and validity checking is done by the SPARQL service itself. :param query: query text. :type query: string :raises TypeError: If the :attr:`query` parameter is not an unicode-string or utf-8 encoded byte-string. """ if sys.version < '3': # have to write it like this, for 2to3 compatibility if isinstance(query, unicode): pass elif isinstance(query, str): query = query.decode('utf-8') else: raise TypeError('setQuery takes either unicode-strings or utf-8 encoded byte-strings') else: if isinstance(query, str): pass elif isinstance(query, bytes): query = query.decode('utf-8') else: raise TypeError('setQuery takes either unicode-strings or utf-8 encoded byte-strings') self.queryString = query self.queryType = self._parseQueryType(query)
[docs] def _parseQueryType(self, query): """ Internal method for parsing the SPARQL query and return its type (ie, :data:`SELECT`, :data:`ASK`, etc). .. note:: The method returns :data:`SELECT` if nothing is specified. This is just to get all other methods running; in fact, this means that the query is erroneous, because the query must be, according to the SPARQL specification. The SPARQL endpoint should raise an exception (via :mod:`urllib`) for such syntax error. :param query: query text. :type query: string :return: the type of SPARQL query (aka SPARQL query form). :rtype: string """ try: query = query if (isinstance(query, str)) else query.encode('ascii', 'ignore') query = self._cleanComments(query) query_for_queryType = re.sub(self.prefix_pattern, "", query.strip()) r_queryType = self.pattern.search(query_for_queryType).group("queryType").upper() except AttributeError: warnings.warn("not detected query type for query '%s'" % query.replace("\n", " "), RuntimeWarning) r_queryType = None if r_queryType in _allowedQueryTypes: return r_queryType else: #raise Exception("Illegal SPARQL Query; must be one of SELECT, ASK, DESCRIBE, or CONSTRUCT") warnings.warn("unknown query type '%s'" % r_queryType, RuntimeWarning) return SELECT
[docs] def setMethod(self, method): """Set the invocation method. By default, this is :data:`GET`, but can be set to :data:`POST`. :param method: should be either :data:`GET` or :data:`POST`. Other cases are ignored. :type method: string """ if method in _allowedRequests: self.method = method
[docs] def setUseKeepAlive(self): """Make :mod:`urllib2` use keep-alive. :raises ImportError: when could not be imported ``keepalive.HTTPHandler``. """ try: from keepalive import HTTPHandler if urllib2._opener and any(isinstance(h, HTTPHandler) for h in urllib2._opener.handlers): # already installed return keepalive_handler = HTTPHandler() opener = urllib2.build_opener(keepalive_handler) urllib2.install_opener(opener) except ImportError: warnings.warn("keepalive support not available, so the execution of this method has no effect")
[docs] def isSparqlUpdateRequest(self): """ Returns ``True`` if SPARQLWrapper is configured for executing SPARQL Update request. :return: Returns ``True`` if SPARQLWrapper is configured for executing SPARQL Update request. :rtype: bool """ return self.queryType in [INSERT, DELETE, CREATE, CLEAR, DROP, LOAD, COPY, MOVE, ADD]
[docs] def isSparqlQueryRequest(self): """ Returns ``True`` if SPARQLWrapper is configured for executing SPARQL Query request. :return: Returns ``True`` if SPARQLWrapper is configured for executing SPARQL Query request. :rtype: bool """ return not self.isSparqlUpdateRequest()
[docs] def _cleanComments(self, query): """ Internal method for returning the query after all occurrence of singleline comments are removed (issues #32 and #77). :param query: The query. :type query: string :return: the query after all occurrence of singleline comments are removed. :rtype: string """ return re.sub(self.comments_pattern, "\n\n", query)
[docs] def _getRequestEncodedParameters(self, query=None): """ Internal method for getting the request encoded parameters. :param query: a tuple of two items. The first item can be the string \ ``query`` (for :data:`SELECT`, :data:`DESCRIBE`, :data:`ASK`, :data:`CONSTRUCT` query) or the string ``update`` \ (for SPARQL Update queries, like :data:`DELETE` or :data:`INSERT`). The second item of the tuple \ is the query string itself. :type query: tuple :return: the request encoded parameters. :rtype: string """ query_parameters = self.parameters.copy() # in case of query = tuple("query"/"update", queryString) if query and (isinstance(query, tuple)) and len(query) == 2: query_parameters[query[0]] = [query[1]] if not self.isSparqlUpdateRequest(): # This is very ugly. The fact is that the key for the choice of the output format is not defined. # Virtuoso uses 'format',sparqler uses 'output' # However, these processors are (hopefully) oblivious to the parameters they do not understand. # So: just repeat all possibilities in the final URI. UGLY!!!!!!! if not self.onlyConneg: for f in _returnFormatSetting: query_parameters[f] = [self.returnFormat] # Virtuoso is not supporting a correct Accept header and an unexpected "output"/"format" parameter value. It returns a 406. # "tsv", "rdf+xml" and "json-ld" are not supported as a correct "output"/"format" parameter value but "text/tab-separated-values" or "application/rdf+xml" are a valid values, # and there is no problem to send both (4store does not support unexpected values). if self.returnFormat in [TSV, JSONLD, RDFXML]: acceptHeader = self._getAcceptHeader() # to obtain the mime-type "text/tab-separated-values" or "application/rdf+xml" if "*/*" in acceptHeader: acceptHeader = "" # clear the value in case of "*/*" query_parameters[f] += [acceptHeader] pairs = ( "%s=%s" % ( urllib.quote_plus(param.encode('UTF-8'), safe='/'), urllib.quote_plus(value.encode('UTF-8'), safe='/') ) for param, values in query_parameters.items() for value in values ) return '&'.join(pairs)
[docs] def _getAcceptHeader(self): """ Internal method for getting the HTTP Accept Header. .. seealso:: `Hypertext Transfer Protocol -- HTTP/1.1 - Header Field Definitions <https://www.w3.org/Protocols/rfc2616/rfc2616-sec14.html#sec14.1>`_ """ if self.queryType in [SELECT, ASK]: if self.returnFormat == XML: acceptHeader = ",".join(_SPARQL_XML) elif self.returnFormat == JSON: acceptHeader = ",".join(_SPARQL_JSON) elif self.returnFormat == CSV: # Allowed for SELECT and ASK (https://www.w3.org/TR/2013/REC-sparql11-protocol-20130321/#query-success) but only described for SELECT (https://www.w3.org/TR/sparql11-results-csv-tsv/) acceptHeader = ",".join(_CSV) elif self.returnFormat == TSV: # Allowed for SELECT and ASK (https://www.w3.org/TR/2013/REC-sparql11-protocol-20130321/#query-success) but only described for SELECT (https://www.w3.org/TR/sparql11-results-csv-tsv/) acceptHeader = ",".join(_TSV) else: acceptHeader = ",".join(_ALL) warnings.warn("Sending Accept header '*/*' because unexpected returned format '%s' in a '%s' SPARQL query form" % (self.returnFormat, self.queryType), RuntimeWarning) elif self.queryType in [CONSTRUCT, DESCRIBE]: if self.returnFormat == TURTLE: acceptHeader = ",".join(_RDF_TURTLE) elif self.returnFormat == N3: acceptHeader = ",".join(_RDF_N3) elif self.returnFormat == XML or self.returnFormat == RDFXML: acceptHeader = ",".join(_RDF_XML) elif self.returnFormat == JSONLD and JSONLD in _allowedFormats: acceptHeader = ",".join(_RDF_JSONLD) else: acceptHeader = ",".join(_ALL) warnings.warn("Sending Accept header '*/*' because unexpected returned format '%s' in a '%s' SPARQL query form" % (self.returnFormat, self.queryType), RuntimeWarning) elif self.queryType in [INSERT, DELETE, CREATE, CLEAR, DROP, LOAD, COPY, MOVE, ADD]: if self.returnFormat == XML: acceptHeader = ",".join(_SPARQL_XML) elif self.returnFormat == JSON: acceptHeader = ",".join(_SPARQL_JSON) else: acceptHeader = ",".join(_ALL) else: acceptHeader = "*/*" return acceptHeader
[docs] def _createRequest(self): """Internal method to create request according a HTTP method. Returns a :class:`urllib2.Request` object of the :mod:`urllib2` Python library :raises NotImplementedError: If the HTTP authentification method is not one of the valid values: :data:`BASIC` or :data:`DIGEST`. :return: request a :class:`urllib2.Request` object of the :mod:`urllib2` Python library """ request = None if self.isSparqlUpdateRequest(): #protocol details at http://www.w3.org/TR/sparql11-protocol/#update-operation uri = self.updateEndpoint if self.method != POST: warnings.warn("update operations MUST be done by POST") if self.requestMethod == POSTDIRECTLY: request = urllib2.Request(uri + "?" + self._getRequestEncodedParameters()) request.add_header("Content-Type", "application/sparql-update") request.data = self.queryString.encode('UTF-8') else: # URL-encoded request = urllib2.Request(uri) request.add_header("Content-Type", "application/x-www-form-urlencoded") request.data = self._getRequestEncodedParameters(("update", self.queryString)).encode('ascii') else: #protocol details at http://www.w3.org/TR/sparql11-protocol/#query-operation uri = self.endpoint if self.method == POST: if self.requestMethod == POSTDIRECTLY: request = urllib2.Request(uri + "?" + self._getRequestEncodedParameters()) request.add_header("Content-Type", "application/sparql-query") request.data = self.queryString.encode('UTF-8') else: # URL-encoded request = urllib2.Request(uri) request.add_header("Content-Type", "application/x-www-form-urlencoded") request.data = self._getRequestEncodedParameters(("query", self.queryString)).encode('ascii') else: # GET request = urllib2.Request(uri + "?" + self._getRequestEncodedParameters(("query", self.queryString))) request.add_header("User-Agent", self.agent) request.add_header("Accept", self._getAcceptHeader()) if self.user and self.passwd: if self.http_auth == BASIC: credentials = "%s:%s" % (self.user, self.passwd) request.add_header("Authorization", "Basic %s" % base64.b64encode(credentials.encode('utf-8')).decode('utf-8')) elif self.http_auth == DIGEST: realm = self.realm pwd_mgr = urllib2.HTTPPasswordMgr() pwd_mgr.add_password(realm, uri, self.user, self.passwd) opener = urllib2.build_opener() opener.add_handler(urllib2.HTTPDigestAuthHandler(pwd_mgr)) urllib2.install_opener(opener) else: valid_types = ", ".join(_allowedAuth) raise NotImplementedError("Expecting one of: {0}, but received: {1}".format(valid_types, self.http_auth)) # The header field name is capitalized in the request.add_header method. for customHttpHeader in self.customHttpHeaders: request.add_header(customHttpHeader, self.customHttpHeaders[customHttpHeader]) return request
[docs] def _query(self): """Internal method to execute the query. Returns the output of the :func:`urllib2.urlopen` method of the :mod:`urllib2` Python library :return: tuples with the raw request plus the expected format. :raises QueryBadFormed: If the HTTP return code is ``400``. :raises Unauthorized: If the HTTP return code is ``401``. :raises EndPointNotFound: If the HTTP return code is ``404``. :raises URITooLong: If the HTTP return code is ``414``. :raises EndPointInternalError: If the HTTP return code is ``500``. :raises urllib2.HTTPError: If the HTTP return code is different to ``400``, ``401``, ``404``, ``414``, ``500``. """ request = self._createRequest() try: if self.timeout: response = urlopener(request, timeout=self.timeout) else: response = urlopener(request) return response, self.returnFormat except urllib2.HTTPError as e: if e.code == 400: raise QueryBadFormed(e.read()) elif e.code == 404: raise EndPointNotFound(e.read()) elif e.code == 401: raise Unauthorized(e.read()) elif e.code == 414: raise URITooLong(e.read()) elif e.code == 500: raise EndPointInternalError(e.read()) else: raise e
[docs] def query(self): """ Execute the query. Exceptions can be raised if either the URI is wrong or the HTTP sends back an error (this is also the case when the query is syntactically incorrect, leading to an HTTP error sent back by the SPARQL endpoint). The usual urllib2 exceptions are raised, which therefore cover possible SPARQL errors, too. Note that some combinations of return formats and query types may not make sense. For example, a SELECT query with Turtle response is meaningless (the output of a SELECT is not a Graph), or a CONSTRUCT query with JSON output may be a problem because, at the moment, there is no accepted JSON serialization of RDF (let alone one implemented by SPARQL endpoints). In such cases the returned media type of the result is unpredictable and may differ from one SPARQL endpoint implementation to the other. (Endpoints usually fall back to one of the "meaningful" formats, but it is up to the specific implementation to choose which one that is.) :return: query result :rtype: :class:`QueryResult` instance """ return QueryResult(self._query())
[docs] def queryAndConvert(self): """Macro like method: issue a query and return the converted results. :return: the converted query result. See the conversion methods for more details. """ res = self.query() return res.convert()
def __str__(self): """This method returns the string representation of a :class:`SPARQLWrapper` object. .. versionadded:: 1.8.3 :return: A human-readable string of the object. :rtype: string """ fullname = self.__module__ + "." + self.__class__.__name__ items = ('"%s" : %r' % (k, v) for k, v in sorted(self.__dict__.items())) str_dict_items = "{%s}" % (',\n'.join(items)) return "<%s object at 0x%016X>\n%s" % (fullname, id(self), str_dict_items)
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[docs]class QueryResult(object): """ Wrapper around an a query result. Users should not create instances of this class, it is generated by a :func:`SPARQLWrapper.query` call. The results can be converted to various formats, or used directly. If used directly: the class gives access to the direct HTTP request results ``response`` obtained from the call to :func:`urllib.urlopen`. It is a file-like object with two additional methods: * ``geturl()`` to return the URL of the resource retrieved * ``info()`` that returns the meta-information of the HTTP result as a dictionary-like object. For convenience, these methods are also available on the :class:`QueryResult` instance. The :func:`__iter__` and :func:`next` methods are also implemented (by mapping them to :attr:`response`). This means that the common idiom ``for l in obj : do_something_with_line(l)`` would work, too. :ivar response: the direct HTTP response; a file-like object, as return by the :func:`urllib2.urlopen` library call. :ivar requestedFormat: The requested format. The possible values are: :data:`JSON`, :data:`XML`, :data:`RDFXML`, :data:`TURTLE`, :data:`N3`, :data:`RDF`, :data:`CSV`, :data:`TSV`, :data:`JSONLD`. :type requestedFormat: string """
[docs] def __init__(self, result): """ :param result: HTTP response stemming from a :func:`SPARQLWrapper.query` call, or a tuple with the expected format: (response, format). """ if isinstance(result, tuple): self.response = result[0] self.requestedFormat = result[1] else: self.response = result
[docs] def geturl(self): """Return the URL of the original call. :return: URL of the original call. :rtype: string """ return self.response.geturl()
[docs] def info(self): """Return the meta-information of the HTTP result. :return: meta-information of the HTTP result. :rtype: dict """ return KeyCaseInsensitiveDict(self.response.info())
def __iter__(self): """Return an iterator object. This method is expected for the inclusion of the object in a standard ``for`` loop. """ return self.response.__iter__()
[docs] def next(self): """Method for the standard iterator.""" return self.response.next()
[docs] def _convertJSON(self): """ Convert a JSON result into a Python dict. This method can be overwritten in a subclass for a different conversion method. :return: converted result. :rtype: dict """ return json.loads(self.response.read().decode("utf-8"))
[docs] def _convertXML(self): """ Convert an XML result into a Python dom tree. This method can be overwritten in a subclass for a different conversion method. :return: converted result. :rtype: :class:`xml.dom.minidom.Document` """ from xml.dom.minidom import parse return parse(self.response)
[docs] def _convertRDF(self): """ Convert a RDF/XML result into an RDFLib Graph. This method can be overwritten in a subclass for a different conversion method. :return: converted result. :rtype: :class:`rdflib.graph.Graph` """ try: from rdflib.graph import ConjunctiveGraph except ImportError: from rdflib import ConjunctiveGraph retval = ConjunctiveGraph() # (DEPRECATED) this is a strange hack. If the publicID is not set, rdflib (or the underlying xml parser) makes a funny # (DEPRECATED) (and, as far as I could see, meaningless) error message... retval.load(self.response) # (DEPRECATED) publicID=' ') return retval
[docs] def _convertN3(self): """ Convert a RDF Turtle/N3 result into a string. This method can be overwritten in a subclass for a different conversion method. :return: converted result. :rtype: string """ return self.response.read()
[docs] def _convertCSV(self): """ Convert a CSV result into a string. This method can be overwritten in a subclass for a different conversion method. :return: converted result. :rtype: string """ return self.response.read()
[docs] def _convertTSV(self): """ Convert a TSV result into a string. This method can be overwritten in a subclass for a different conversion method. :return: converted result. :rtype: string """ return self.response.read()
[docs] def _convertJSONLD(self): """ Convert a RDF JSON-LD result into an RDFLib Graph. This method can be overwritten in a subclass for a different conversion method. :return: converted result :rtype: :class:`rdflib.graph.Graph` """ from rdflib import ConjunctiveGraph retval = ConjunctiveGraph() retval.load(self.response, format='json-ld')# (DEPRECATED), publicID=' ') return retval
[docs] def convert(self): """ Encode the return value depending on the return format: * in the case of :data:`XML`, a DOM top element is returned * in the case of :data:`JSON`, a json conversion will return a dictionary * in the case of :data:`RDF/XML<RDFXML>`, the value is converted via RDFLib into a ``RDFLib Graph`` instance * in the case of :data:`JSON-LD<JSONLD>`, the value is converted via RDFLib into a ``RDFLib Graph`` instance * in the case of RDF :data:`Turtle<TURTLE>`/:data:`N3`, a string is returned * in the case of :data:`CSV`/:data:`TSV`, a string is returned * In all other cases the input simply returned. :return: the converted query result. See the conversion methods for more details. """ def _content_type_in_list(real, expected): """ Internal method for checking if the content-type header received matches any of the content types of the expected list. :param real: The content-type header received. :type real: string :param expected: A list of expected content types. :type expected: list :return: Returns a boolean after checking if the content-type header received matches any of the content types of the expected list. :rtype: boolean """ return True in [real.find(mime) != -1 for mime in expected] def _validate_format(format_name, allowed, mime, requested): """ Internal method for validating if the requested format is one of the allowed formats. :param format_name: The format name (to be used in the warning message). :type format_name: string :param allowed: A list of allowed content types. :type allowed: list :param mime: The content-type header received (to be used in the warning message). :type mime: string :param requested: the requested format. :type requested: string """ if requested not in allowed: message = "Format requested was %s, but %s (%s) has been returned by the endpoint" warnings.warn(message % (requested.upper(), format_name, mime), RuntimeWarning) # TODO. In order to compare properly, the requested QueryType (SPARQL Query Form) is needed. For instance, the unexpected N3 requested for a SELECT would return XML if "content-type" in self.info(): ct = self.info()["content-type"] # returned Content-Type value if _content_type_in_list(ct, _SPARQL_XML): _validate_format("XML", [XML], ct, self.requestedFormat) return self._convertXML() elif _content_type_in_list(ct, _XML): _validate_format("XML", [XML], ct, self.requestedFormat) return self._convertXML() elif _content_type_in_list(ct, _SPARQL_JSON): _validate_format("JSON", [JSON], ct, self.requestedFormat) return self._convertJSON() elif _content_type_in_list(ct, _RDF_XML): _validate_format("RDF/XML", [RDF, XML, RDFXML], ct, self.requestedFormat) return self._convertRDF() elif _content_type_in_list(ct, _RDF_N3): _validate_format("N3", [N3, TURTLE], ct, self.requestedFormat) return self._convertN3() elif _content_type_in_list(ct, _CSV): _validate_format("CSV", [CSV], ct, self.requestedFormat) return self._convertCSV() elif _content_type_in_list(ct, _TSV): _validate_format("TSV", [TSV], ct, self.requestedFormat) return self._convertTSV() elif _content_type_in_list(ct, _RDF_JSONLD): _validate_format("JSON(-LD)", [JSONLD, JSON], ct, self.requestedFormat) return self._convertJSONLD() else: warnings.warn("unknown response content type '%s' returning raw response..." %(ct), RuntimeWarning) return self.response.read()
[docs] def _get_responseFormat(self): """ Get the response (return) format. The possible values are: :data:`JSON`, :data:`XML`, :data:`RDFXML`, :data:`TURTLE`, :data:`N3`, :data:`CSV`, :data:`TSV`, :data:`JSONLD`. In case there is no Content-Type, ``None`` is return. In all other cases, the raw Content-Type is return. .. versionadded:: 1.8.3 :return: the response format. The possible values are: :data:`JSON`, :data:`XML`, :data:`RDFXML`, :data:`TURTLE`, :data:`N3`, :data:`CSV`, :data:`TSV`, :data:`JSONLD`. :rtype: string """ def _content_type_in_list(real, expected): """ Internal method for checking if the content-type header received matches any of the content types of the expected list. :param real: The content-type header received. :type real: string :param expected: A list of expected content types. :type expected: list :return: Returns a boolean after checking if the content-type header received matches any of the content types of the expected list. :rtype: boolean """ return True in [real.find(mime) != -1 for mime in expected] if "content-type" in self.info(): ct = self.info()["content-type"] # returned Content-Type value if _content_type_in_list(ct, _SPARQL_XML): return XML elif _content_type_in_list(ct, _XML): return XML elif _content_type_in_list(ct, _SPARQL_JSON): return JSON elif _content_type_in_list(ct, _RDF_XML): return RDFXML elif _content_type_in_list(ct, _RDF_TURTLE): return TURTLE elif _content_type_in_list(ct, _RDF_N3): return N3 elif _content_type_in_list(ct, _CSV): return CSV elif _content_type_in_list(ct, _TSV): return TSV elif _content_type_in_list(ct, _RDF_JSONLD): return JSONLD else: warnings.warn("Unknown response content type. Returning raw content-type ('%s')." %(ct), RuntimeWarning) return ct return None
[docs] def print_results(self, minWidth=None): """This method prints a representation of a :class:`QueryResult` object that MUST has as response format :data:`JSON`. :param minWidth: The minimum width, counting as characters. The default value is ``None``. :type minWidth: string """ # Check if the requested format was JSON. If not, exit. responseFormat = self._get_responseFormat() if responseFormat != JSON: message = "Format return was %s, but JSON was expected. No printing." warnings.warn(message % (responseFormat), RuntimeWarning) return results = self._convertJSON() if minWidth: width = self.__get_results_width(results, minWidth) else: width = self.__get_results_width(results) index = 0 for var in results["head"]["vars"]: print ("?" + var).ljust(width[index]), "|", index += 1 print print "=" * (sum(width) + 3 * len(width)) for result in results["results"]["bindings"]: index = 0 for var in results["head"]["vars"]: result_value = self.__get_prettyprint_string_sparql_var_result(result[var]) print result_value.ljust(width[index]), "|", index += 1 print
def __get_results_width(self, results, minWidth=2): width = [] for var in results["head"]["vars"]: width.append(max(minWidth, len(var)+1)) for result in results["results"]["bindings"]: index = 0 for var in results["head"]["vars"]: result_value = self.__get_prettyprint_string_sparql_var_result(result[var]) width[index] = max(width[index], len(result_value)) index += 1 return width def __get_prettyprint_string_sparql_var_result(self, result): value = result["value"] lang = result.get("xml:lang", None) datatype = result.get("datatype", None) if lang is not None: value += "@"+lang if datatype is not None: value += " ["+datatype+"]" return value def __str__(self): """This method returns the string representation of a :class:`QueryResult` object. :return: A human-readable string of the object. :rtype: string .. versionadded:: 1.8.3 """ fullname = self.__module__ + "." + self.__class__.__name__ str_requestedFormat = '"requestedFormat" : '+repr(self.requestedFormat) str_url = self.response.url str_code = self.response.code str_headers = self.response.info() str_response = '"response (a file-like object, as return by the urllib2.urlopen library call)" : {\n\t"url" : "%s",\n\t"code" : "%s",\n\t"headers" : %s}' % (str_url, str_code, str_headers) return "<%s object at 0x%016X>\n{%s,\n%s}" % (fullname, id(self), str_requestedFormat, str_response)